Package: cumSeg 1.3
cumSeg: Change Point Detection in Genomic Sequences
Estimation of number and location of change points in mean-shift (piecewise constant) models. Particularly useful (but not confined) to model genomic sequences of continuous measurements.
Authors:
cumSeg_1.3.tar.gz
cumSeg_1.3.zip(r-4.5)cumSeg_1.3.zip(r-4.4)cumSeg_1.3.zip(r-4.3)
cumSeg_1.3.tgz(r-4.5-any)cumSeg_1.3.tgz(r-4.4-any)cumSeg_1.3.tgz(r-4.3-any)
cumSeg_1.3.tar.gz(r-4.5-noble)cumSeg_1.3.tar.gz(r-4.4-noble)
cumSeg_1.3.tgz(r-4.4-emscripten)cumSeg_1.3.tgz(r-4.3-emscripten)
cumSeg.pdf |cumSeg.html✨
cumSeg/json (API)
NEWS
| # Install 'cumSeg' in R: |
| install.packages('cumSeg', repos = c('https://vitomuggeo.r-universe.dev', 'https://cloud.r-project.org')) |
- fibroblast - Fibroblast Cell Line dataset
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 5 years agofrom:67cf77a9f0. Checks:6 OK, 3 NOTE. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Mar 17 2025 |
| R-4.5-win | NOTE | Mar 17 2025 |
| R-4.5-mac | NOTE | Mar 17 2025 |
| R-4.5-linux | NOTE | Mar 17 2025 |
| R-4.4-win | OK | Mar 17 2025 |
| R-4.4-mac | OK | Mar 17 2025 |
| R-4.4-linux | OK | Mar 17 2025 |
| R-4.3-win | OK | Mar 17 2025 |
| R-4.3-mac | OK | Mar 17 2025 |
Exports:fit.controljumpointsplot.aCGHsegmentedprint.aCGHsegmentedsel.control
Dependencies:lars
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Change point detection and estimation in genomic sequences | cumSeg-package cumSeg |
| Fibroblast Cell Line dataset | fibroblast |
| Auxiliary function for controlling model fitting | fit.control |
| Change point estimation in piecewise constant models | jumpoints |
| Plot method for the class 'aCGHsegmented' | plot.aCGHsegmented |
| Print method for the aCGHsegmented class | print.aCGHsegmented |
| Auxiliary function for controlling model selection | sel.control |
